tvs-sde/oxford-omop-data-mapper
A documentation-centric DuckDB based ETL tool, implementing transformations of a number of common clinical datasets into the OMOP CDM.
This tool helps clinical data analysts and researchers transform various common clinical datasets into the OMOP Common Data Model. It takes your existing patient records, diagnoses, and treatment data, and standardizes them into a consistent format suitable for large-scale observational research. The output is a structured, queryable OMOP CDM database ready for analysis.
Use this if you need to convert diverse clinical data sources into the standardized OMOP Common Data Model for research and analysis.
Not ideal if you are working with non-clinical data or require highly customized, domain-specific data transformations outside the OMOP standard.
Stars
10
Forks
—
Language
C#
License
Apache-2.0
Category
Last pushed
Mar 26, 2026
Commits (30d)
0
Get this data via API
curl "https://pt-edge.onrender.com/api/v1/quality/data-engineering/tvs-sde/oxford-omop-data-mapper"
Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.
Higher-rated alternatives
PrefectHQ/prefect
Prefect is a workflow orchestration framework for building resilient data pipelines in Python.
growthbook/growthbook
Open Source Feature Flags, Experimentation, and Product Analytics
koopjs/koop
Transform, query, and download geospatial data on the web.
pathwaycom/pathway
Python ETL framework for stream processing, real-time analytics, LLM pipelines, and RAG.
dagster-io/dagster
An orchestration platform for the development, production, and observation of data assets.