Biomedical Literature RAG Embedding Tools

RAG systems specifically designed for searching, retrieving, and synthesizing biomedical literature, clinical research, and pharmaceutical documents. Does NOT include general-purpose RAG systems, non-medical research tools, or healthcare compliance/billing applications.

There are 32 biomedical literature rag tools tracked. The highest-rated is debanjan06/geospatial-rag at 37/100 with 12 stars.

Get all 32 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=embeddings&subcategory=biomedical-literature-rag&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Tool	Score	Tier	Stars	Language
1	debanjan06/geospatial-rag AI Framework for Remote Sensing Image Analysis using RAG - 88%+ accuracy,...	37	Emerging	12	Python
2	berntpopp/phentrieve AI-powered system for mapping clinical text to Human Phenotype Ontology...	28	Experimental	4	Python
3	aimagelab/ReT [CVPR 2025] Recurrence-Enhanced Vision-and-Language Transformers for Robust...	28	Experimental	34	Python
4	Atharv279/RAGify-Finance Benchmarks Cohere vs HuggingFace embeddings for financial document Q&A using RAG	27	Experimental	1	Python
5	SirSail/Priqualis Pre-submission compliance validator for healthcare claims. Combines...	24	Experimental	1	Python
6	IanD25/principia-diagnostics Graph coherence engine for research datasets — Fisher Information...	22	Experimental	—	Python
7	WINEEL/smartdocs-architect Cloud-hosted GenAI RAG application for semantic document search and grounded...	22	Experimental	—	Python
8	sasi123-stack/BioScholar-AI BioScholar AI—an intelligent biomedical research engine powered by OpenClaw...	22	Experimental	1	HTML
9	merlow1337/Priqualis 🔍 Validate healthcare billing packages for NFZ efficiently, reducing...	21	Experimental	—	Python
10	shakilahmedemon/rag-research-assistant The Advanced RAG Academic Assistant is a sophisticated Retrieval-Augmented...	21	Experimental	—	Python
11	vanbelkummax/polymath A Polymathic Research Intelligence System - Cross-domain literature search...	21	Experimental	—	Python
12	CodeWithCharan/PharmaQuery Pharmaceutical Insight Retrieval System designed to help users gain...	21	Experimental	9	Jupyter Notebook
13	UKiyooooo/multimodal-rag-engine 🔍 Build an advanced RAG system for multi-modal search across text, images,...	21	Experimental	—	—
14	intelligolabs/Le-RNR-Map [ICCV 23] Official repository for Language-enhanced RNR-Map: Querying...	19	Experimental	17	Python
15	smebad/PregniSense AI-powered pregnancy risk assessment app that classifies pregnancy symptom...	18	Experimental	1	Python
16	DistilledCode/mmrl Multi-Modal Representational Learning for Social Media Popularity Prediction	18	Experimental	2	Python
17	azhwinraj/multimodal-rag-engine Production-ready RAG system with multi-modal search across text, images,...	17	Experimental	—	—
18	jvachier/scientific-literature-rag Production RAG system for scientific literature synthesis with SPECTER2...	17	Experimental	—	Python
19	farrimoh/scholar-rag Search, summarize, and cite from your research papers using Azure AI Search...	17	Experimental	—	Python
20	abiruth29/health-materials-rag-system Advanced Biomedical Materials Discovery Platform using RAG and AI	17	Experimental	—	HTML
21	datalordstephen/finquery FinQuery is an intelligent financial document assistant that helps extract...	16	Experimental	1	Python
22	chaitanyahegde23/slack-finance-copilot Slack-based AI copilot for analyzing personal bank statements using...	14	Experimental	—	—
23	parthtiwari2407/rfx-accelerator End-to-end RFX response automation system leveraging Document AI for OCR,...	14	Experimental	—	Python
24	DewashishCodes/HackrX6.0_Claud9 𝗧𝗼𝗽 18𝟬 𝗼𝘂𝘁 𝗼𝗳 𝟰𝟲,𝟭𝟳𝟴 𝗽𝗮𝗿𝘁𝗶𝗰𝗶𝗽𝗮𝗻𝘁𝘀 in HackRx 6.0. 90% Accuracy, sub 30s...	14	Experimental	1	Python
25	anselmoAJ/Multimodal-Clinical-RAG-Assistant-Medical-Text-Image-Retrieval-System- 🩺 Enhance medical diagnostics by integrating text and image analysis,...	13	Experimental	—	Python
26	ywatanabe1989/openalex-local Local OpenAlex database with 284M+ scholarly works, abstracts, and semantic...	13	Experimental	—	Python
27	Mervecaliskann/Video-RAG-AI-Search AI-powered Video Search Engine using Multimodal RAG. Search inside videos...	13	Experimental	—	Python
28	SERGI0HERREROS/OncoCBR OncoCBR is a clinical decision-support system based on Case-Based Reasoning...	13	Experimental	—	Jupyter Notebook
29	DaviAlves06/pharma-rag-assistant Python-based RAG system using Gemini 1.5 Flash to answer pharmaceutical...	13	Experimental	—	Jupyter Notebook
30	datafromlopes/edurag_geo Educational & Geospatial Retrieval-Augmented Generation System. A hybrid RAG...	13	Experimental	—	—
31	bilalnaqvi7/Helpmate-AI-Insurance-RAG-Assistant Built HelpMate AI, a multi-document RAG assistant for insurance policy...	13	Experimental	—	Jupyter Notebook
32	Khushi-c-sharma/multimodal-rag-agent Multimodal RAG with Adobe PDF Extract, CLIP embeddings & MMR diversity....	12	Experimental	1	Python