Protein Language Models Embedding Tools

There are 6 protein language models tools tracked. 1 score above 50 (established tier). The highest-rated is BernhoferM/TMbed at 50/100 with 46 stars.

Get all 6 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=embeddings&subcategory=protein-language-models&limit=20"

Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.

#	Tool	Score	Tier	Stars	Language
1	BernhoferM/TMbed Transmembrane proteins predicted through Language Model embeddings	50	Established	46	Python
2	sacdallago/bio_embeddings Get protein embeddings from protein sequences	46	Emerging	507	HTML
3	tbepler/prose Multi-task and masked language model-based protein sequence embedding models.	44	Emerging	106	Python
4	Rostlab/VESPA VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect...	40	Emerging	34	Python
5	DeepRank/DeepRank-GNN-esm Graph Network for protein-protein interface including language model features	40	Emerging	34	Python
6	bschilder/VEP_protein Using Protein Language Models to compute Variant Effect Predictions across...	21	Experimental	—	Jupyter Notebook