Clinical LLM Tools

LLMs, datasets, and frameworks specifically designed for clinical applications including medical text analysis, patient documentation, diagnosis support, and healthcare decision-making. Does NOT include general medical AI, radiology-specific tools, or clinical decision rule development without LLM components.

There are 47 clinical llm tools tracked. 1 score above 50 (established tier). The highest-rated is Sam-Osian/PFD-toolkit at 57/100 with 3 stars and 34 monthly downloads.

Get all 47 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=llm-tools&subcategory=clinical-llm-tools&limit=20"

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#	Tool	Score	Tier	Stars	Language
1	Sam-Osian/PFD-toolkit Analyse Prevention of Future Death (PFD) reports with AI	57	Established	3	Python
2	SmartFlowAI/EmoLLM 心理健康大模型 (LLM x Mental Health), Pre & Post-training & Dataset & Evaluation &...	49	Emerging	1,701	Python
3	AI-in-Health/MedLLMsPracticalGuide [Nature Reviews Bioengineering🔥] Application of Large Language Models in...	47	Emerging	1,991	—
4	Zlasejd/HuangDI 黄帝(Huang-Di)模型仓库，基于Ziya-LLaMA-13B-V1的中医古籍知识问答大模型。	42	Emerging	152	Python
5	mims-harvard/Madrigal Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from...	42	Emerging	40	Jupyter Notebook
6	X-D-Lab/Sunsimiao 🌿孙思邈中文医疗大模型(Sunsimiao)：提供安全、可靠、普惠的中文医疗大模型	41	Emerging	471	Python
7	TsinghuaC3I/MedXpertQA [ICML 2025] MedXpertQA: Benchmarking Expert-Level Medical Reasoning and Understanding	39	Emerging	142	Python
8	ELM-Research/ELM A Training and Evaluation Framework for ECG-Language Models (ELMs)	39	Emerging	9	Python
9	kbressem/LongHealth LongHealth: A Question Answering Benchmark with Long Clinical Documents	39	Emerging	28	Python
10	gersteinlab/MedAgents [ACL 2024 Findings] MedAgents: Large Language Models as Collaborators for...	36	Emerging	330	Python
11	JhCircle/Kardia-R1 [WWW] Kardia-R1: Unleashing LLMs to Reason toward Understanding and Empathy...	36	Emerging	56	Python
12	StanfordMIMI/clin-bhc-summ [JAMIA 2024] A dataset and benchmark for hospital course summarization with...	36	Emerging	10	Jupyter Notebook
13	alimoezzi/ReportQL Code and dataset for paper - Application of Deep Learning in Generating...	35	Emerging	11	Jupyter Notebook
14	tyang816/Awesome-TCM-LLM Open-source Traditional Chinese Medical Large Language Models. （开源中文医疗大模型合集）	35	Emerging	50	—
15	nhsx/ELM4PSIR ELM4PSIR - Exploring Language Modelling for (NHS) Patient Safety Incident...	35	Emerging	6	Jupyter Notebook
16	FreedomIntelligence/Apollo Multilingual Medicine: Model, Dataset, Benchmark, Code	35	Emerging	199	Python
17	yang-ai-lab/HEARTS HEARTS: Benchmarking LLM Reasoning on Health Time Series	33	Emerging	27	Python
18	jcheng5/rmedicine-2025 Slides and examples for R/Medicine workshop "Demystifying LLMs with Ellmer"	31	Emerging	12	R
19	ammarlodhi255/Chest-xray-report-generation-app-with-chatbot-end-to-end-implementation AI-powered Chest X-ray report generation app using VLM (Swin-T5) and LLM...	28	Experimental	10	Jupyter Notebook
20	csinva/clinical-rule-development Building and vetting clinical decision rules.	28	Experimental	10	Jupyter Notebook
21	starmpcc/Asclepius Official Codes for "Publicly Shareable Clinical Large Language Model Built...	26	Experimental	114	Python
22	UKPLab/eacl2026-culturecare Repository for "Tailored Emotional LLM-Supporter: Enhancing Cultural...	26	Experimental	1	JavaScript
23	jjfenglab/HACHI Human-AI Co-design for Clinical Prediction Models	26	Experimental	3	Python
24	kelkalot/normedqa NorMedQA is designed to evaluate the medical knowledge and reasoning...	23	Experimental	6	Jupyter Notebook
25	BARUDA-AI/Awesome-Medical-LLM Large language model of Medical AI, General Medical AI (GMAI)	23	Experimental	17	—
26	hossam1522/MedicalExplAIner Using LLMs to predict emergency triage acuity from patient data, evaluated...	22	Experimental	—	Python
27	DavePower-cloud/llm-clinical-simulation Multi-agent large language model framework for simulating clinical...	22	Experimental	—	Jupyter Notebook
28	rhavekost/clinical-toolkit Clinical LLM prompt/skill toolkit for screening, scoring, safety,...	21	Experimental	—	JavaScript
29	Mattjesc/RtDC-LLM-IoT-Health Real-time Data Capture for Integration with LLMs to Enhance User Experience...	21	Experimental	1	CSS
30	GaoxiangLuo/LLM-BioMed-NER-RE [npj Digital Medicine] An In-Depth Evaluation of Federated Learning on...	20	Experimental	11	Jupyter Notebook
31	McJackTang/LLM-HealthAssistant ALPHA: AnomaLous Physiological Health Assessment Using Large Language Models...	19	Experimental	19	Jupyter Notebook
32	marswen/ThreeSensei Leverage LLM agent to conduct clinical consultation	19	Experimental	3	Python
33	openlifescience-ai/Awesome-AI-LLMs-in-Radiology A curated list of awesome resources, papers, datasets, and tools related to...	19	Experimental	43	—
34	ganeshvannam/tinyllama-clinical-assistant- This is my final project in Artificial Intelligence in Health Care course	18	Experimental	1	Jupyter Notebook
35	criticalml-uw/EvalPrompt Analyzing medical misinformation when using LLMs for self-diagnosis.	17	Experimental	1	Jupyter Notebook
36	ParthaPRay/diverticulitis_ollama_LLM This repo presents codes that helps patients to get informed about...	15	Experimental	—	Python
37	AlexanderSychev2005/radio-analysis This repository contains an R&D project focused on the automated...	15	Experimental	2	Python
38	lorenzofranze/NLP-medical-Q-A The aim of the project was to study the Medical Meadow Medical Flashcards...	15	Experimental	1	Jupyter Notebook
39	grauso-t/Medical-AI Tesi di laurea triennale. Utilizzo dei Large Language Models (LLM) per...	14	Experimental	—	Python
40	yuan-phd/decisionlens DecisionLENS — A clinical trial decision support platform built on 573,674...	13	Experimental	—	Jupyter Notebook
41	PRITHIVSAKTHIUR/EHRM-Models EHRM [ Electronic Health Record Management ] introduces a centralized...	13	Experimental	10	HTML
42	eejji/CIEDep-Net Depression detection using audio, text and LLMs	13	Experimental	—	—
43	cghr-toronto/wen-et-al-2025-cava Computer Assisted Verbal Autopsy: Comparing Large Language Models to...	13	Experimental	—	BibTeX Style
44	room-b007/test-medicina Evaluate your LLMs with the national entrance exams for Italian medical schools.	11	Experimental	3	Python
45	UCL-CHME0039-24-25/ammir :robot: :hospital: End-to-End AI Workflow for Automated Multimodal Medical...	11	Experimental	—	Python
46	pathak-ashutosh/clinical-risk-prediction Clinical Risk Prediction using EHRs	10	Experimental	2	Jupyter Notebook
47	csinva/analyzing-patient-perspectives Analyzing interview data from the PediDOSE EFIC interviews using LLMs.	10	Experimental	2	—