NygenAnalytics/CyteType
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
CyteType automates the tedious task of identifying cell types in single-cell RNA sequencing data. You provide your preprocessed scRNA-seq dataset, and it returns clearly labeled cell types, complete with supporting scientific evidence and confidence scores. This is for biologists and researchers who analyze gene expression at the single-cell level.
117 stars. Available on PyPI.
Use this if you need fast, consistent, and evidence-backed cell type annotations for your single-cell RNA-seq experiments, especially to reduce manual curation time and ensure reproducibility.
Not ideal if you prefer entirely manual, expert-driven annotation without any AI assistance or need to analyze data types other than single-cell RNA-seq.
Stars
117
Forks
17
Language
Python
License
—
Category
Last pushed
Mar 12, 2026
Commits (30d)
0
Dependencies
9
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