AICONSlab/MIRACL
Multi-modal Image Registration And Connectivity anaLysis
This project helps neuroscientists and researchers analyze complex brain imaging data. It takes multi-modal imaging data (like LSFM and MRI scans) and anatomical atlases, then automatically registers the images, segments features in 3D, and performs connectivity and statistical analyses. The output includes detailed brain-wide connectivity maps and insights into neuronal activity or morphology changes.
Use this if you need an automated pipeline to register diverse brain imaging data to atlases, segment brain structures in 3D, and perform comprehensive connectivity or statistical analysis.
Not ideal if you are looking for a simple image viewer or manual annotation tool rather than an automated analysis pipeline for complex brain data.
Stars
48
Forks
10
Language
Python
License
—
Category
Last pushed
Mar 09, 2026
Commits (30d)
0
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