GuillaumeMougeot/biom3d
Easy Volumetric Segmentation with Deep Learning
This tool helps researchers and scientists automatically identify and outline specific structures within 3D volumetric scans, such as medical images or microscopy data. You provide 3D image data, and it outputs precise segmentations of the objects of interest. This is useful for biologists, medical imaging specialists, and anyone working with 3D image analysis.
Available on PyPI.
Use this if you need to perform semantic segmentation on 3D volumetric images quickly and accurately, without extensive deep learning expertise.
Not ideal if your workflow requires 2D U-Net, 3D-Cascade U-Net, or distributed parallel computing (beyond Pytorch Data Parallel).
Stars
28
Forks
7
Language
Python
License
GPL-3.0
Category
Last pushed
Mar 04, 2026
Commits (30d)
0
Dependencies
20
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