Lattice-Automation/icor-codon-optimization
RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
ICOR helps molecular biologists and synthetic biologists optimize DNA sequences for maximum protein production in E. coli. You provide an amino acid or DNA sequence, and it generates an optimized DNA sequence. This is for researchers working with genetic engineering or protein expression who need to synthesize genes for bacterial systems.
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Use this if you need to improve the expression of a desired protein in E. coli by optimizing its DNA sequence for better codon usage.
Not ideal if you are looking to optimize protein expression in organisms other than E. coli, as the model is specifically trained for E. coli codon bias.
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Python
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MIT
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Apr 10, 2023
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