Lotfollahi-lab/nichecompass
End-to-end analysis of spatial multi-omics data
This helps biologists and medical researchers analyze complex spatial multi-omics data. You provide raw spatial omics data from tissue samples, and it identifies distinct cellular niches, infers how cells communicate within these niches, and helps build detailed spatial atlases. This tool is for scientists working with high-resolution biological imaging and genomic information.
104 stars. Available on PyPI.
Use this if you need to understand the spatial organization of cells and their communication patterns within tissues using multi-omics data.
Not ideal if you are working with non-spatial omics data or only need basic statistical analysis of gene expression.
Stars
104
Forks
16
Language
Python
License
BSD-3-Clause
Category
Last pushed
Jan 26, 2026
Commits (30d)
0
Dependencies
7
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