VisualPhysiologyDB/visual-physiology-opsin-db
A database of opsin genotype-phenotype data and machine-learning models trained to predict opsin phenotypes.
This project helps scientists in fields like visual physiology and molecular evolution study opsin proteins. It provides a comprehensive database of opsin gene sequences and their corresponding peak light sensitivity (λmax) phenotypes. Researchers can use this to understand how opsin genotypes relate to their light-sensing properties, feeding into machine learning models to predict λmax from gene sequences.
Use this if you are a vision scientist, molecular biologist, or evolutionary biologist working with opsin genes and need to access curated genotype-phenotype data or train models to predict opsin light sensitivity.
Not ideal if you are a casual user looking for a simple, interactive online tool for opsin λmax prediction, as this primarily offers the underlying data and model training resources.
Stars
8
Forks
2
Language
Jupyter Notebook
License
GPL-3.0
Category
Last pushed
Mar 06, 2026
Commits (30d)
0
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