a-r-j/graphein
Protein Graph Library
This project helps computational biologists and biochemists analyze the intricate structures of proteins and RNA. It takes protein data from sources like the PDB or AlphaFold2 predictions, or RNA from dotbracket notation, and converts them into structured graph representations. These graphs can then be used to study interactions, predict functions, or explore structural properties.
1,165 stars. Used by 1 other package. Actively maintained with 1 commit in the last 30 days. Available on PyPI.
Use this if you need to transform complex protein or RNA structural data into graph formats for detailed analysis or machine learning applications.
Not ideal if you primarily need to visualize basic protein structures without performing complex graph-based computational analyses.
Stars
1,165
Forks
140
Language
Jupyter Notebook
License
MIT
Category
Last pushed
Mar 09, 2026
Commits (30d)
1
Dependencies
25
Reverse dependents
1
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