chanzuckerberg/saber
Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2
This tool helps scientists in electron microscopy precisely identify and outline organelles within 3D cryo-electron tomography or EM datasets. You input your raw microscopy data, and SABER outputs detailed 3D segmentation masks of organelles. It's designed for researchers and lab technicians who analyze cellular structures and need automated, accurate organelle detection.
Use this if you need to automatically or interactively segment organelles from large cryo-ET or EM datasets without extensive manual labeling for every new experiment.
Not ideal if you are working with light microscopy data or require segmentation of structures other than cellular organelles.
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15
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1
Language
Jupyter Notebook
License
MIT
Category
Last pushed
Mar 12, 2026
Commits (30d)
0
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