dan-veltri/amp-scanner-v2
Antimicrobial Peptide Scanner Version 2. Open source GLPv3 release of code from 2018 paper "Deep learning improves antimicrobial peptide recognition" published in the journal Bioinformatics: https://doi.org/10.1093/bioinformatics/bty179
This tool helps researchers and scientists identify potential antimicrobial peptides (AMPs) within their protein sequence data. You input a FASTA file containing protein sequences, and it outputs a list of sequences predicted to be AMPs, along with their prediction scores. This is ideal for biologists, biochemists, or pharmaceutical researchers looking to discover new therapeutic peptides.
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Use this if you need to screen a set of protein sequences to find potential antimicrobial peptides for further research or drug discovery.
Not ideal if you need to analyze sequences shorter than 10 or significantly longer than 200 amino acids, as the models were not trained on such data and predictions may be inaccurate.
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Language
Python
License
GPL-3.0
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Last pushed
Jan 20, 2025
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