ecalabr/brain_mask
3D deep convolutional neural network based segmentation and brain masking tool for multi-modal brain imaging
This tool helps neuroimaging researchers and clinicians accurately separate brain tissue from non-brain tissue (like skull or skin) in 3D MRI scans. You input Nifti-formatted MRI images with specific naming conventions, and it outputs a precise brain mask, which is a binary image highlighting only the brain. It's designed for anyone working with human brain MRI data who needs to segment the brain for further analysis.
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Use this if you need to reliably create brain masks for a collection of multi-modal brain MRI images (like T1, T1c, T2, FLAIR sequences) and your data is in Nifti format.
Not ideal if your imaging data is not 3D brain MRI, if your files are not g-zipped Nifti, or if you need to mask non-brain organs or tissues.
Stars
18
Forks
2
Language
Python
License
—
Category
Last pushed
Oct 03, 2025
Commits (30d)
0
Get this data via API
curl "https://pt-edge.onrender.com/api/v1/quality/ml-frameworks/ecalabr/brain_mask"
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