google/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
DeepVariant helps geneticists and researchers accurately identify genetic variations from DNA sequencing data. You provide raw DNA sequencing reads (BAM/CRAM files), and it outputs a list of identified genetic variants in standard VCF or gVCF files. This is used by scientists and bioinformaticians working with human genome data to understand genetic differences.
3,654 stars. Actively maintained with 1 commit in the last 30 days.
Use this if you need to precisely call germline genetic variants from next-generation sequencing data for diploid human organisms.
Not ideal if you are working with non-human organisms and don't have species-specific models, or if you need somatic variant calling (use DeepSomatic instead).
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Language
Python
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BSD-3-Clause
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Last pushed
Mar 05, 2026
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