jsxlei/SCALEX
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space
This tool helps single-cell biologists combine multiple single-cell datasets, even if they were generated using different methods or in different labs. You input various single-cell omics datasets (like scRNA-seq or scATAC-seq data) and it outputs a harmonized representation of your cells and genes, along with visualizations, enabling you to compare and analyze them together. This is for researchers working with single-cell genomics who need to integrate diverse experimental results.
Use this if you need to combine single-cell data from different experiments or sources to get a unified view of cell populations and gene expression patterns.
Not ideal if you are working with bulk sequencing data or only have a single, homogeneous single-cell dataset that doesn't require integration.
Stars
83
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17
Language
Jupyter Notebook
License
BSD-3-Clause
Category
Last pushed
Mar 06, 2026
Commits (30d)
0
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