junlabucsd/napari-mm3
Mother machine image analysis through napari
This tool helps cell biologists and microbiologists analyze high-throughput single-cell images captured using a 'mother machine' microscopy setup. You input raw microscopy data (like .nd2 files or TIFFs) and it outputs segmented cell images, individual cell properties, lineage tracking information, and fluorescence data. It's designed for researchers studying bacterial growth, division, and other single-cell dynamics.
Available on PyPI.
Use this if you are performing experiments with mother machines and need to automate the segmentation, tracking, and quantitative analysis of individual cells and their fluorescence over time.
Not ideal if your microscopy images are not from a mother machine setup, or if you only need basic image viewing without advanced biological segmentation and tracking.
Stars
10
Forks
4
Language
Jupyter Notebook
License
BSD-3-Clause
Category
Last pushed
Feb 17, 2026
Commits (30d)
0
Dependencies
10
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