kaist-ina/BWA-MEME
BWA-MEME: Faster BWA-MEM2 using learned-index
This tool helps speed up the process of aligning DNA sequencing reads to a reference genome. You provide raw sequencing data (FASTQ files) and a reference genome, and it outputs a SAM file detailing where each read maps to the genome. It's designed for bioinformaticians, geneticists, or researchers who regularly perform whole-genome sequencing analysis.
133 stars. No commits in the last 6 months.
Use this if you need to align DNA sequencing reads to a reference genome faster than existing BWA-MEM2 tools on CPU-only machines, especially when building high-throughput sequencing clusters.
Not ideal if your existing pipeline is already bottlenecked by downstream steps like SAM file sorting, or if you prefer GPU/FPGA hardware acceleration.
Stars
133
Forks
16
Language
C++
License
MIT
Category
Last pushed
Jul 01, 2024
Commits (30d)
0
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