kalininalab/ALPAR
Single Reference Antimicrobial Resistance
ALPAR helps microbiologists and public health researchers analyze how bacteria develop resistance to antibiotics. It takes raw bacterial genomic sequence data, organized by antibiotic and resistance status, and a reference genome. It then automatically processes this into detailed tables of genetic mutations, phylogenetic trees, and identifies the specific mutations linked to antimicrobial resistance.
Use this if you need to systematically analyze large collections of bacterial genomes to understand the genetic basis of antibiotic resistance.
Not ideal if you only have a few genomic samples or if your primary goal is not to identify resistance-associated mutations.
Stars
7
Forks
—
Language
Python
License
MIT
Category
Last pushed
Mar 13, 2026
Commits (30d)
0
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