kevinjohncutler/omnipose
Omnipose: a high-precision solution for morphology-independent cell segmentation
Omnipose helps biologists and researchers accurately identify and outline individual cells in microscope images, regardless of their shape or imaging method. It takes 2D or 3D images of cells (like bacteria or C. elegans) and outputs precise cell boundaries. This tool is for scientists working with microscopy data who need to quantify or analyze individual cells.
142 stars. Available on PyPI.
Use this if you need to precisely segment cells of various shapes and types from diverse microscopy images.
Not ideal if your primary need is general image segmentation outside of biological cell analysis.
Stars
142
Forks
44
Language
Python
License
—
Category
Last pushed
Feb 14, 2026
Commits (30d)
0
Dependencies
31
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