leylabmpi/resmico
Identifying misassemblies via deep learning
This tool helps microbiologists and bioinformaticians identify errors in metagenome-assembled genomes (MAGs). It takes contig FASTA files and their associated Illumina paired-end reads as input. The output is a likelihood score (between 0 and 1) indicating if a particular genome was misassembled, helping users improve the quality of their genomic assemblies.
No commits in the last 6 months. Available on PyPI.
Use this if you need to detect and filter out misassemblies in your metagenome-assembled genomes, especially after performing read alignment.
Not ideal if you are not working with metagenomic data, contigs, or Illumina paired-end reads.
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11
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1
Language
Jupyter Notebook
License
MIT
Category
Last pushed
May 01, 2024
Commits (30d)
0
Dependencies
15
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