liyu95/DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
This tool helps genetics researchers and bioinformatics scientists simulate the entire process of Nanopore DNA sequencing. You provide a reference genome or assembled DNA sequences, and it generates realistic electrical current signals and simulated DNA reads, mimicking an actual Nanopore experiment. It's designed for those who need to test bioinformatics pipelines or analyze sequencing behavior without costly and time-consuming wet-lab experiments.
123 stars. No commits in the last 6 months.
Use this if you need to generate synthetic Nanopore sequencing data, including electrical signals and DNA reads, based on a reference genome to test analysis workflows or understand sequencing characteristics.
Not ideal if you need to simulate sequencing from platforms other than Oxford Nanopore, or if you require an extremely quick and simple tool without realistic signal generation.
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123
Forks
39
Language
C
License
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Category
Last pushed
Oct 20, 2020
Commits (30d)
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