mt1022/cubar
R Package for Codon Usage Bias Analysis. Comprehensive documentation and tutorials are available at:
This tool helps molecular biologists and geneticists analyze how frequently certain codons appear in gene sequences. You input your gene coding sequences (CDS), and it calculates various metrics like codon adaptation index or effective number of codons. It's designed for researchers studying gene expression, evolution, or optimizing protein production.
Use this if you need to deeply analyze codon usage patterns in your genomic or transcriptomic data to understand gene expression regulation, evolutionary pressures, or for optimizing protein production.
Not ideal if you are looking for a simple sequence alignment tool or general-purpose bioinformatics pipeline not specifically focused on codon usage.
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R
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Last pushed
Oct 29, 2025
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