samsinai/FLEXS
Fitness landscape exploration sandbox for biological sequence design.
This tool helps biologists and biochemists who design biological sequences, like DNA, RNA, or proteins, for specific functions. It provides a simulated environment to test how well different computational algorithms can explore and find optimal sequences. You input an algorithm and a biological fitness landscape (the 'ground truth'), and the tool shows you how efficiently and effectively your algorithm identifies sequences with desired properties.
170 stars. No commits in the last 6 months. Available on PyPI.
Use this if you are developing or evaluating computational methods for designing biological sequences and need a standardized, reproducible way to test their performance against known biological functions.
Not ideal if you are looking for a tool to directly design or synthesize biological sequences for experimental use without prior algorithm development or benchmarking.
Stars
170
Forks
22
Language
Jupyter Notebook
License
Apache-2.0
Category
Last pushed
Feb 16, 2023
Commits (30d)
0
Dependencies
9
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