simonorozcoarias/Inpactor2
Inpactor2: LTR retrotransposon detector and classificator using Deep Learning
This tool helps biologists and geneticists quickly find and categorize LTR retrotransposons within a genomic assembly. You provide a genome sequence in FASTA format, and it generates a curated library of detected LTR-RTs and a detailed report of their classification and confidence scores. This is for researchers working with plant or animal genome sequencing data.
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Use this if you need to rapidly detect and classify LTR retrotransposons in a genomic assembly, filtering out fragments or nested insertions.
Not ideal if your input data consists of short sequencing reads rather than a complete genomic assembly, or if your genome assembly is highly fragmented.
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Jupyter Notebook
License
GPL-3.0
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Last pushed
Jun 17, 2025
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