zeissmicroscopy/ZEN_API_Python_CZI_workshop
Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics
This project helps microscopy scientists and researchers automate tasks and enhance their image analysis workflows. It allows you to feed in raw CZI microscopy image files and either control the microscope during acquisition, perform real-time image processing, or apply advanced deep learning models for tasks like segmenting cell nuclei. The output includes processed images, segmentation masks, or automated acquisition routines. This is for biologists, materials scientists, or anyone using Zeiss ZEN microscopy systems.
Use this if you need to programmatically control your ZEN microscope, automate image acquisition based on real-time analysis, or apply deep learning for precise segmentation and analysis of CZI image data.
Not ideal if you are looking for a simple, out-of-the-box software solution without any programming or scripting.
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3
Language
Jupyter Notebook
License
GPL-3.0
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Last pushed
Feb 25, 2026
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