biocore/qadabra
Snakemake workflow for comparison of differential abundance ranks
Qadabra helps microbiome researchers and scientists compare different statistical methods for finding which microbes are more or less abundant between groups (like 'case' vs. 'control'). You input your microbiome feature tables, sample metadata, and optionally a phylogenetic tree. It then runs various differential abundance tests and generates visualizations and a comprehensive report showing the ranked results from each method, helping you understand their agreement and disagreement.
No commits in the last 6 months.
Use this if you need to robustly identify differentially abundant microbes in your microbiome dataset by comparing the outcomes of multiple analysis methods.
Not ideal if you are looking for a single, definitive answer from one specific statistical method without comparing its results to others.
Stars
13
Forks
4
Language
Python
License
BSD-3-Clause
Category
Last pushed
Mar 22, 2024
Commits (30d)
0
Get this data via API
curl "https://pt-edge.onrender.com/api/v1/quality/mlops/biocore/qadabra"
Open to everyone — 100 requests/day, no key needed. Get a free key for 1,000/day.