Medical Entity Extraction NLP Tools

Tools for identifying and extracting medical entities (diseases, treatments, drugs, symptoms, adverse events) from clinical and healthcare text using NER techniques. Does NOT include entity linking/disambiguation, general domain NER, or clinical NLP tasks beyond entity extraction.

There are 27 medical entity extraction tools tracked. The highest-rated is yuzhimanhua/Multi-BioNER at 46/100 with 135 stars.

Get all 27 projects as JSON

curl "https://pt-edge.onrender.com/api/v1/datasets/quality?domain=nlp&subcategory=medical-entity-extraction&limit=20"

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#	Tool	Score	Tier	Stars	Language
1	yuzhimanhua/Multi-BioNER Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning...	46	Emerging	135	Python
2	AstraZeneca/KAZU Fast, world class biomedical NER	46	Emerging	89	Python
3	mukhal/xlm-roberta-ner Named Entity Recognition with Pretrained XLM-RoBERTa	45	Emerging	92	Python
4	SapphireFang1998/ANCHOLIK-NER-A-Benchmark-Dataset-for-Bangla-Regional-Named-Entity-Recognition Our paper, titled 'ANCHOLIK-NER: A Benchmark Dataset for Bangla Regional...	43	Emerging	1	Jupyter Notebook
5	cdliai/ottoman-ner Ottoman Language Name Entity Recognition toolkit	42	Emerging	5	Python
6	Alibaba-NLP/KB-NER Winner system (DAMO-NLP) of SemEval 2022 MultiCoNER shared task over 10 out...	41	Emerging	186	Python
7	smart-primate/Named_Entity_Recognition_Healthcare_Data Named Entity Recognition in Healthcare data to identify possible diseases...	40	Emerging	12	Jupyter Notebook
8	frankkramer-lab/GERNERMED GERNERMED is the first open neural NER model for medical entities designed...	38	Emerging	18	Python
9	blawok/named-entity-recognition 2020 - [RoBERTa, BiLSTM, SageMaker] Experiments with NER	31	Emerging	4	Jupyter Notebook
10	alvi-khan/Bangla-HealthNER The data and code of 'NERvous About My Health: Constructing a Bengali...	31	Emerging	3	Python
11	R-aryan/Name_Entity_Recognition This repository contains model for NER trained on clinical data to extract...	31	Emerging	3	Jupyter Notebook
12	SuperBruceJia/MedicalNER An implementation of several models (BiLSTM-CRF, BiLSTM-CNN, BiLSTM-BiLSTM)...	30	Emerging	19	Jupyter Notebook
13	iajaykarthick/NER-medical-text This project is to develop a named entity recognition (NER) model to...	27	Experimental	13	HTML
14	frankkramer-lab/GERNERMED-pp GERNERMED++ is a transfer-learning-based open neural NER model for medical...	27	Experimental	9	Python
15	Public-Health-Scotland/dose_instruction_parser Parsing prescription dose instructions using Named Entity Recognition and rules	25	Experimental	4	Python
16	Dimas263/NLP_NER_BILSTM_CRF_Named_Entity_Recognition NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan...	24	Experimental	2	Jupyter Notebook
17	mtkaya/medner-tr Turkish Medical Named Entity Recognition System	24	Experimental	1	—
18	Megha-Bose/Disease-NER Given a medical diagnosis, identifying medical conditions within the text...	21	Experimental	9	Jupyter Notebook
19	maxime7770/NER-Medical-Documents Named-entity recognition (drugs, diseases, ...) in medical documents....	21	Experimental	9	Python
20	HasibAlMuzdadid/Bengali-Person-Name-Entity-Extraction Built an intelligent Bengali person name entity extraction engine that reads...	20	Experimental	1	Jupyter Notebook
21	Priberam/sru-ner Source code for the paper "Effective Multi-Task Learning for Biomedical...	20	Experimental	3	Python
22	Rajspeaks/Machine-Learning-approach-to-Bengali-corpus-Name-Entity-Recognition-testing-using-BNLP Machine Learning approach to Bengali corpus NER- Named Entity Recognition...	19	Experimental	3	Jupyter Notebook
23	lsvannur/MedicalNER Medical named Entity Recognition for Building Knowledge Graphs	17	Experimental	1	Jupyter Notebook
24	zhukovanadezhda/psy-ner 🧠💬 Enhance mental health research with a custom Named Entity Recognition model ❤️💊	11	Experimental	3	Jupyter Notebook
25	Dimas263/NLP_NER_BERT_BILSTM_CRF_Named_Entity_Recognition NLP Named Entity Recognition dalam bidang Biomedis, mendeteksi teks dan...	11	Experimental	4	Jupyter Notebook
26	Indrayana-creator/NLP-LEGAL-EXTRACTION Legal entity extraction from Indonesian court verdicts using NLP and deep...	11	Experimental	—	Jupyter Notebook
27	RakshithaBS/NER_tag_identification NER Tagging model trained on medical data which extracts the diseases and...	10	Experimental	2	Python

Comparisons in this category

GERNERMED and GERNERMED-pp (38 vs 27) Name_Entity_Recognition and NER-medical-text (31 vs 27)