yxwucq/scExtract
Automatic annotation of single-cell RNA-seq data from the literature
This tool helps single-cell RNA sequencing researchers automatically understand and categorize the different cell types in their data. By taking your raw single-cell RNA-seq data and a relevant scientific article in PDF or text format, it extracts crucial information and annotates your cells. This is designed for scientists working with single-cell genomics who need to rapidly process and integrate data from various studies.
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Use this if you are a single-cell genomics researcher who needs to automatically annotate and integrate single-cell RNA-seq datasets described in scientific literature.
Not ideal if your primary need is general text extraction from scientific articles unrelated to single-cell data, or if you prefer entirely manual cell type annotation.
Stars
46
Forks
6
Language
Python
License
BSD-2-Clause
Category
Last pushed
Jul 20, 2025
Commits (30d)
0
Get this data via API
curl "https://pt-edge.onrender.com/api/v1/quality/nlp/yxwucq/scExtract"
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