Bayer-Group/text-to-sql-epi-ehr-naacl2024

Code for Retrieval augmented text-to-SQL generation for epidemiological question answering using electronic health records

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This tool helps epidemiologists, medical researchers, and public health analysts quickly extract insights from large electronic health records (EHR) datasets. You provide a question in plain English, like "How many women have atopic dermatitis?", and it generates a SQL query. This query can then be executed against an OMOP-CDM compliant database to retrieve the relevant patient counts or data.

No commits in the last 6 months.

Use this if you need to translate natural language questions into precise SQL queries for epidemiological analysis of electronic health records, especially within the OMOP Common Data Model.

Not ideal if you don't work with electronic health records in an OMOP-CDM format or if you need a fully automated query execution system without any manual review or adjustment.

epidemiology medical-research electronic-health-records public-health-informatics clinical-data-analysis
Stale 6m No Package No Dependents
Maintenance 0 / 25
Adoption 6 / 25
Maturity 16 / 25
Community 16 / 25

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Stars

24

Forks

7

Language

Python

License

MIT

Last pushed

May 15, 2024

Commits (30d)

0

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