cafferychen777/ChatSpatial
🧬 Analyze spatial transcriptomics data through natural language conversation. Stop writing code, start having conversations with your data. MCP server for Claude Code and Codex.
ChatSpatial helps life scientists analyze spatial transcriptomics data using natural language, eliminating the need to write code. You provide your spatial transcriptomics data file (e.g., .h5ad) and conversational prompts, and it generates visual analyses and insights. This tool is for biologists, bioinformaticians, and medical researchers who work with gene expression data in a spatial context.
Available on PyPI.
Use this if you want to quickly explore and analyze spatial transcriptomics data like 10x Visium or MERFISH using plain English commands rather than programming.
Not ideal if you prefer to write custom scripts for every step of your analysis or if you need to integrate with non-MCP compatible tools.
Stars
20
Forks
5
Language
Python
License
MIT
Category
Last pushed
Mar 07, 2026
Commits (30d)
0
Dependencies
30
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