dohlee/chromoformer
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
Chromoformer helps epigenetics and genomics researchers predict gene expression levels from complex genomic data. It takes raw ChIP-seq signals and gene expression data for various cell lines as input. The output is a prediction of gene expression for a given gene, helping scientists understand the regulatory state at the core promoter. This tool is designed for researchers studying gene regulation and epigenomics.
No commits in the last 6 months. Available on PyPI.
Use this if you are a genomics researcher looking to predict gene expression by modeling complex cis-regulatory interactions from ChIP-seq data.
Not ideal if you are not working with ChIP-seq data or are interested in predicting gene expression using simpler, non-epigenomic features.
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Language
Python
License
GPL-3.0
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Last pushed
Aug 16, 2023
Commits (30d)
0
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